Plant MITE

SE3830382

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8700
Solanum tuberosum
SE3830382
hAT
Hat47
chr03:9105796-9106178
GACCAAAC
CCAGTGGCGGAGCCAG

Secondary structure and sequence

TSD TIR

5'

3'

GACCAAA    T        --   ----AA       -  AGAGTGTTCAACCTTTAAAGAGTCGATAATTTTTTTTTTTGGCGGAGTGGGTACACAAAATATATATTTTTTTACCGATGAGTAGGTGCACAAAAATTTCTGTGTTTTTTTGTTACAAAAGAGATTTGTATTAAAAAAATACAACAAGTGGGAA
       CCAG GGCGGAGC  CAG      ATTTCGC TA                                                                                                                                                          
       |||| ||||||||  |||      ||||||| ||                                                                                                                                                           
       GGTC CCGCCTCG  GTC      TTCCCAC AG                                                                                                                                                          
CAAACCA    C        AT   GGATCA       C  TCTACTTGTGGGAAGCAGCTTTTTAATATAGCCCATATATCCGTTTTATATCAGATTATAGACCTATACATAATTAACTTGTGAGAAACTGTGTCGTTTTCGTCTACCAGGTCGCTATCCACGTGAGCAAATGAAGTACCTCCAGACCCAAGCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830382

GACCAAACCAGTGGCGGAGCCAGAAATTTCGCTAAGAGTGTTCAACCTTTAAAGAGTCGATAATTTTTTTTTTTGGCGGAGTGGGTACACAAAATATATATTTTTTTACCGATGAGTAGGTGCACAAAAATTTCTGTGTTTTTTTGTTACAAAAGAGATTTGTATTAAAAAAATACAACAAGTGGGAATCGAACCCAGACCTCCATGAAGTAAACGAGTGCACCTATCGCTGGACCATCTGCTTTTGCTGTGTCAAAGAGTGTTCAATTAATACATATCCAGATATTAGACTATATTTTGCCTATATACCCGATATAATTTTTCGACGAAGGGTGTTCATCTGACCACCCTTACTAGGCTGTAGCTCCGCCCCTGGACCAAAC

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