SE3830384

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8702
  • Solanum tuberosum
  • SE3830384
  • hAT
  • Hat19
  • chr03:5705554-5705689
  • CTGGATTC
  • GGATTCCTATGTTGCTCGGACTCTTCAAAAATGTCCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
CT      --   T                        --  -  GGTGA   C                AG
  GGATTC  CTA GTTGCTCGGACTCTTCAAAAATGT  CC CA     GTG CGGATCCTTCAAAAGT  
  ||||||  ||| ||||||||||||||||||||||||  || ||     ||| ||||||||||||||||  T
  CTTAGG  GAT CAACGAGCTTGAGAGGTTTTTACA  GG GT     CAC GCCTAGGAGGTTTTTA  
        TC   T                        AC  C  --GGG   A                CG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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