SE3830386

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8704
  • Solanum tuberosum
  • SE3830386
  • hAT
  • Hat49
  • chr09:50311906-50312350
  • TGGACAAG
  • TGGACAAGCAAGGGCGGACCCACG

Secondary structure and sequence

TSD    TIR
5'



3'
    GA AA   AG      C   C TGTA  --   T           GCACCCA     C       -     --       TGTATATAGAAAATATTGAAAAATTTATATAAGGTTTCTTTCAGCACCCATTAAACAGAGTGTTCCATGGGCGTTGTGGTTCTAAAGTCGGATTCTAGGAGCACTGGTGCCCTTCATCGAGGGTTTGAGCCCATGCAACAACAT
  TG  C  GCA  GGCGGA CCA G    GA  GTT TGGGTGCTCGA       TTGAC CCGACGG AAACT  TTATATA                                                                                                                                                
  ||  |  |||  |||||| ||| |    ||  ||| |||||||||||       ||||| ||||||| |||||  |||||||                                                                                                                                                 
  AC  G  TGT  CCGCCT GGT C    CT  TAG ACCCACGAGTT       AATTG TTCGGTT TTTTT  AGAAAGA                                                                                                                                                
GA  AG --   CA      A   C TAAG  AC   C           -AAGAAA     -       T     TA       TCTTCAAATGATGATTATAAAAATATTAAATTAATTATTTACTTTATGTTTTTTATCTTTTCACCTTTTGTTTTTCTTTATATTCGTTTTTAAACTTTTTCTTCAGTTCTCCAAAGACAACCGGAAAAAAGTTGTTTTTCTAAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End