Plant MITE

SE3820388

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8706
Solanum tuberosum
SE3820388
Mutator
M6
chr08:2020496-2020808
TAAAAGTTA
TTAGGGAAAATGGTTTGAAAAATACTCCAATGTTGGCCGAAATTGCTGTTACGATACCAAACTTTATGGAGGACCTTTTACCCCTGTACTATTTAATAGTGTATTTTAAAGGTATATATGTGTCCACGTGGACACATTACTATTT

Secondary structure and sequence

TSD TIR

5'

3'

TAAAAG          T         A   C   -   G    C            T      C        AT                 -                                                  -   TAC     ATAA
      TTAGGGAAAA GGTTTGAAA ATA TCC AAT TTGG CGAAATTGCTGT ACGATA CAAACTTT  GGAGGACCTTTTACCCC TGTACTATTTAATAGTGTATTTTAAAGGTATATATGTGTCCACGTGGACA CAT   TATTT    
      |||||||||| ||||||||| ||| ||| ||| |||| |||||||||||| |||||| ||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||||    T
      AATCCTTTTT CCAAACTTT TAT AGG TTA AACT GCTTTAACGACA TGCTAT GTTTGAAA  TTTCCTGGAAAATGGGG ACGTGATAAATTATCACATAAAATTTCCATATATACACGGGTGCACCTGT GTA   ATAAA    
ATTGAA          C         A   -   C   A    A            T      A        CT                 G                                                  A   TTT     GTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820388

TAAAAGTTAGGGAAAATGGTTTGAAAAATACTCCAATGTTGGCCGAAATTGCTGTTACGATACCAAACTTTATGGAGGACCTTTTACCCCTGTACTATTTAATAGTGTATTTTAAAGGTATATATGTGTCCACGTGGACACATTACTATTTATAATTATGAAATATTTATGATGTCCACGTGGGCACATATATACCTTTAAAATACACTATTAAATAGTGCAGGGGGTAAAAGGTCCTTTTCAAAGTTTGATATCGTTACAGCAATTTCGATCAAAATTCGGATATATTTCAAACCCTTTTTCCTAAAAGTTA

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