SE3810391

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8709
  • Solanum tuberosum
  • SE3810391
  • Tc1/Mariner
  • St13
  • chr08:31336498-31336750
  • TA
  • TACTCCCTCCGTTTCAAAAAGAATGACCT

Secondary structure and sequence

TSD    TIR
5'



3' 
                A         C  CCTTTCCTT    -- TC    T ----    ----    TGACCTCTTTCTTTTTTTGGTAACATTTTAATTTCAGCTTTCCACGTGGCATGTTTAAGGCCACA
TACTCCCTCCGTTTCA AAAGAATGA CT         TTAA  G  TGTT A    AAAA    AGAA                                                                 
|||||||||||||||| ||||||||| ||         ||||  |  |||| |    ||||    ||||                                                                 A
ATGAGGGAGGCAAAGT TTTCTTACT GA         TGAA  G  TGCC T    TTCT    TTTC                                                                 
                G         A  ---TCAAAC    CC --    - CAAA    TTTA    TTCTGAAAACTTAGAACACCAGGATTTAATTTCAATACAGTTTACATGTTTTAACGAGAAATTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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