SE3830395

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8713
  • Solanum tuberosum
  • SE3830395
  • hAT
  • Hat7
  • PGSC0003DMB000001862:2538-3216
  • CCCGGAGC
  • CCGGAGCCAGGGGCGGCTC

Secondary structure and sequence

TSD    TIR
5'



3'
  C    A  C    G      A   TAATTTGTGGCCTAAAGCGAAATTTTTATTAGAGGCCTAAAATCTATATAACTTTTATCTATATCTATTTATTTTGCTAATTTTCTAGATATAAATTACTACTTAATATCTTTTATATAAATGATTTTTCAAACACTTTTTTTTTTAATTATTAGTTTTAAGTAAGATTTTATCAATTCAGCATTGAAAAACATCCTTTTATTGAGACAATTATTATATGAATTATTAACACAATTTTATAAGTAATAGTTGATAAACTTTAAAGATAAGAGTTAGAATCATAGAATCTGATTCAAAAAGTTGATAACTTGGTAT
   CCGG GC AGGG CGGCTC ACA                                                                                                                                                                                                                                                                                                                           
   |||| || |||| |||||| |||                                                                                                                                                                                                                                                                                                                           A
   GGCC CG TCCC GCCGAG ACG                                                                                                                                                                                                                                                                                                                           
CGA    -  -    G      A   GATATATTAAAATCCGTAACCGGAATCCGGGGGTTAAAAACCCCCGGAGTATAAAAATATTTATTTTTTAATACATAGAATTGGGGTAAGTTTATCTTCTTTAATTCCTTTGTAACAAAACCTAAGAATGTAAAAGAAGCAATTGTGAGTGTAATAAATAGGAAACATTGAGAAAAACGTGAGATAAAGAAGTTTAGAAACTATCAATCTCATTATGTGAGAGTTTTTATACTTAGTTATCAGCTTTTCACAACTTGTTTCACGTAATGTTTAATAATAAAAATTAAATAAACAATTAAAAGTATAATTTCATCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End