Plant MITE

SE3810405

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8723
Solanum tuberosum
SE3810405
Tc1/Mariner
St1
chr11:1845998-1846262
TA
TACTCCCTCTATCCCTAATTACTTGTCCACTTTT

Secondary structure and sequence

TSD TIR

5'

3'

     C    ATC             C  C    -GAATTGACA      -   ---- GAAAACAATTAATGACATAGTGAGTTTACCATTTTACCCCTATTAATTATGAAGTGGATGAAAAGTTCTACATTTT
TACTC CTCT   CCTAATTACTTGT CA TTTT          CACTAA TTA    A                                                                            
||||| ||||   ||||||||||||| || ||||          |||||| |||    |                                                                            T
ATGAG GAGA   GGATTAATGAACA GT AAAA          TTAACA GGA    T                                                                            
     A    CAA             A  A    AAGAAAAATA      A   TTAA GAACAAGTAAAACTGTTTAGTTCTTTCCTGTTAAAAAAATGGATAATATGGGAGTTAATTTACTAATTATTGAAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810405

TACTCCCTCTATCCCTAATTACTTGTCCACTTTTGAATTGACACACTAATTAAGAAAACAATTAATGACATAGTGAGTTTACCATTTTACCCCTATTAATTATGAAGTGGATGAAAAGTTCTACATTTTTCAAAGTTATTAATCATTTAATTGAGGGTATAATAGGTAAAAAAATTGTCCTTTCTTGATTTGTCAAAATGAACAAGTAATTAGGAACAATTATAAAAAGAAAAAAATGAACAAGTAATTAGGAACAGAGAGAGTA

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