SE3850410

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8728
  • Solanum tuberosum
  • SE3850410
  • PIF/harbinger
  • To5
  • PGSC0003DMB000000041:1417373-1417828
  • TAG
  • AGGGGTCATTTGGTAGAGTGTATAAGAATAATGCT

Secondary structure and sequence

TSD    TIR
5'



3'
 T       A               ---A           ------TAATAAA      TAG  -    TT  ATTAATAATGCATGTATTAGTTATGTTTGCATTAATTATACACAGATTATTTTAATGCATTGTTTGATTTGATGCATTAAAAATAGTATGTATTGCATTTAAAAAATTATTTACAAAGATACCCTCCACTTTTATGGTGGAAAAGATGTAAAAAAAGGTTTTG
  AGGGGTC TTTGGTAGAGTGTAT    AGAATAATGCT             GTGTAT   TA ATGC  GC                                                                                                                                                                   
  ||||||| |||||||||||||||    |||||||||||             ||||||   || ||||  ||                                                                                                                                                                    
  TCCCCAG AAACCATCTCACATA    TTTTATTACGA             ACATAA   TG TCAT  GG                                                                                                                                                                   
AT       C               ATCC           TAATAATCGAAAC      ---  A    --  AGCAAACCATGAGAAAAAGTTGGAGACATATTGATTACAAACGTAATCAATATGTAAGATAACACATAATTCCACACGTAACGATTATGGTACTTAAAGATCCATAATCGTTACGTTATTAAAATTACGTACGTAATTTTACTATTTTCTGAGTTAACAGGGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End