Plant MITE

SE3820413

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8731
Solanum tuberosum
SE3820413
Mutator
M6
chr05:57916646-57917023
TATTGTATT
T

Secondary structure and sequence

TSD TIR

5'

3'

     TAT    T  TAAA     A         ATGTGGACATCATAAATATTGCATAATTATAAGGGAAAATGCATAAGTACCCCCCAGCCTATGCCCAAAATCCCTGAGACACACCTAACCTTTACTAAGGTCCTATTACCCTCCCGAACTTATTTTATATATAATTTTCTACCCCTTTTCGGCCTACGTG
        TGTA TT    GGTAT TATGTGTCC                                                                                                                                                                
        |||| ||    ||||| |||||||||                                                                                                                                                                G
        TCCC TT    TTACG TATTCATGG                                                                                                                                                                
AATATTAA    -  ----     -         GGGGTCGGATACGGGTTTTAGGGACTCTGTGTGGATTGGAAATGATTCCAGGATAATGGGGGGACTTGAATAAAAAAATTAATTAAAAGATGAGGAAAAGCCGGATGCACCGTGATAGGAACTTTTTTAACAGTTGTGTGCGACCCGGGTGTTCTATCAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820413

TATTGTATTTTAAAGGTATATATGTGTCCATGTGGACATCATAAATATTGCATAATTATAAGGGAAAATGCATAAGTACCCCCCAGCCTATGCCCAAAATCCCTGAGACACACCTAACCTTTACTAAGGTCCTATTACCCTCCCGAACTTATTTTATATATAATTTTCTACCCCTTTTCGGCCTACGTGGCACTATCTTGTGGGCCCAGCGTGTGTTGACAATTTTTTCAAGGATAGTGCCACGTAGGCCGAAAAGGAGTAGAAAATTAATTAAAAAAATAAGTTCAGGGGGGTAATAGGACCTTAGTAAAGGTTAGGTGTGTCTCAGGGATTTTGGGCATAGGCTGGGGGGTACTTATGCATTTTCCCTAATTATAA

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