Plant MITE

SE3810418

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8736
Solanum tuberosum
SE3810418
Tc1/Mariner
St16
chr11:10860383-10860617
TA
TACTCCCTCCGTCCCAATTTATGTGGC

Secondary structure and sequence

TSD TIR

5'

3'

        CC                 ----------------AC     GACTT        ---- - AA   A GAAGACATTTAAAAATTGTGGTCTAAAACAAACCTTAGATATTTGTGTGACTATA
TACTCCCT  GTCCCAATTTATGTGGC                  TGTTT     GACACAGT    T T  AAA G                                                       
||||||||  |||||||||||||||||                  |||||     ||||||||    | |  ||| |                                                        
ATGAGGGA  CAGGGTTAAATACATCG                  AGGGT     TTTACTTA    G A  AAG A                                                       
        AA                 GAAAAGGAAAAATGAGAC     -----        CAGT G --   - TATTAATCTTTGTTAAGTTGAAATTTTAAGAGGAAAATGGAAATTAATTTACTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810418

TACTCCCTCCGTCCCAATTTATGTGGCACTGTTTGACTTGACACAGTTTAAAAAAGGAAGACATTTAAAAATTGTGGTCTAAAACAAACCTTAGATATTTGTGTGACTATAAATCATTTAATTAAAGGTAAAAGGAGAATTTTAAAGTTGAATTGTTTCTAATTATAGAAAGGTGACATTCATTTTGGGACAGAGTAAAAAGGAAAAGGCTACATAAATTGGGACAAAGGGAGTA

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