SE3820419

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8737
  • Solanum tuberosum
  • SE3820419
  • Mutator
  • M6
  • chr02:49262811-49263220
  • TTCATTTTA
  • AGGGATAAGGGTCTGAAAAATACCCTAACTTTGGTCGAATTTGCTATTGCGATACTAAACTTTCATGAGGACCTATTACCTCCCTAGACTATTTAATACCGTATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCATTTT            C         C              A       A                      G                                      AAA  TATATATTTGCCTTCATGATGACCTATTACCTCCCTAGACTATTTAATACCGTATTTTAAACATATATATTTGCCCACGTGGACAT
        AGGGATAAGGGT TGAAAAATA CCTAACTTTGGTCG ATTTGCT TTGCGATACTAAACTTTCATGA GACCTATTACCTCCCTAGACTATTTAATACCGTATTTT   CA                                                                                      
        |||||||||||| ||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   ||                                                                                      A
        TCCCTATTCCCA ACTTTTTAT GGGTTGAAACCAGC TAAACGA AACGCTATGATTTGAAAGTACT CTGGATAATGGAGGGATCTGATAAATTATGGCATAAAA   AA                                                                                      
ATTTTACT            A         A              C       C                      A                                      ---  TGGGGGTTTTGATAAATTATCACATAAAATTTCCATATATACACGGGTGCACCTGTGTAATGATAAATATTAAAACGTAATAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3