SE3820423

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8741
  • Solanum tuberosum
  • SE3820423
  • Mutator
  • M8
  • chr03:47220827-47221132
  • TATTTGAAA
  • TTTGAAAGACATAATACATAAACATGACCTTTAACTTGGC

Secondary structure and sequence

TSD    TIR
5'



3'
TA      -  A                   C           GTCCGCT  T   TAC    A       C     G          TAGAC                       C  A         TC         -----       AATTTCA
  TTTGAA AG CATAATACATAAACATGAC TTTAACTTGGC       CA GAC   TATG TCTTTAA TTTGG TGTGCATAAG     ACTTAAACTTGTATAAAATTGAA AA TAGATACAT  GTCCTACAT     GGTACAC       
  |||||| || ||||||||||||||||||| |||||||||||       || |||   |||| ||||||| ||||| ||||||||||     ||||||||||||||||||||||| || |||||||||  |||||||||     |||||||       T
  AAGTTT TC GTATTATGTATTTGTACTG AAATTGAATTG       GT CTG   ATAC GGAAGTT AAACT ACACGTGTTT     TGAATTTGAACATATTTTAACTT TT ATCTGTGTA  CAGGATGTA     TTATGTG       
 A      A  C                   A           --AAATT  -   TTA    A       A     G          ---TA                       A  C         CA         ACGGA       CATCCTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End