Plant MITE

SE3810426

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8744
Solanum tuberosum
SE3810426
Tc1/Mariner
St16
chr04:48037036-48037310
TA
TACTCCCTCTGACCCAATTTTTGTG

Secondary structure and sequence

TSD TIR

5'

3'

           A        TT   GCACCCTTTC -    TAGTCCGTCCCAAAAAGAATATCATCTTTCCTTATATGGAAACTATTTAATGGCACCATTCATTTTACCCTTATTGGATCCCACTTAGTACTTAATTGTGA
TACTCCCTCTG CCCAATTT  GTG          C TTTT                                                                                                     
||||||||||| ||||||||  |||          | ||||                                                                                                     A
ATGAGGGAGGC GGGTTAAA  CAC          G GACA                                                                                                     
           A        TC   ---------A A    AACTGTCGCGTACCTCAAATTCTTTATTCCCTTCTGAAACAATACAAATGGTTTAACAGGAATAATTACAGTGAAATCACGAATGAAAATCAGTTGAGAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810426

TACTCCCTCTGACCCAATTTTTGTGGCACCCTTTCCTTTTTAGTCCGTCCCAAAAAGAATATCATCTTTCCTTATATGGAAACTATTTAATGGCACCATTCATTTTACCCTTATTGGATCCCACTTAGTACTTAATTGTGAAGAAGAGTTGACTAAAAGTAAGCACTAAAGTGACATTAATAAGGACAATTTGGTAAACATAACAAAGTCTTCCCTTATTTCTTAAACTCCATGCGCTGTCAAACAGAGACACCTAAATTGGGACGGAGGGAGTA

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