SE3820429

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8747
  • Solanum tuberosum
  • SE3820429
  • Mutator
  • M6
  • chr01:88067567-88067807
  • TTTTAAAAA
  • AAAAGGGATAAGGGTCTGAAAAATACCCCAACTTTGGTCGGATTTGTTGTTGCGATACTAAACTTTCATAAGGACCTATTACCTCCCTAGACTATTTCCACGTGGACAAATA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTA                                                                     A                           --CCA    -GAC     TA
     AAAAGGGATAAGGGTCTGAAAAATACCCCAACTTTGGTCGGATTTGTTGTTGCGATACTAAACTTTCAT AGGACCTATTACCTCCCTAGACTATTT     CGTG    AAATA  
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     ||||    |||||   
     TTTTCCCTATTCCCAGACTTTTTATGGGGTTGAAACCAGCCTAAACGACAACGCTATGATTTGAAAGTA TCCTGGATAATGGAGGGATCTGATAAA     GCAT    TTTGT  
AAAAA                                                                     C                           TTATG    AAAA     AT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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