SE3830448

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8766
  • Solanum tuberosum
  • SE3830448
  • hAT
  • Hat19
  • PGSC0003DMB000000803:22588-22724
  • CAGCCATG
  • GCCATGCTATGTTGCTCGGACTCTTCAAAAATGTCGACGGGTGCGTGTCGGATCCTCCAAAAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
  CA  CA     T  T   C                 C A  G  G             C     A AGT
    GC  TGCTA GT GCT GGACTCTTCAAAAATGT G CG GT CGTGTCGGATCCT CAAAA C   
    ||  ||||| || ||| ||||||||||||||||| | || || ||||||||||||| ||||| |    
    CG  ACGAT CA CGA CCTGAGAGGTTTTTACA C GC TG GCACAGTCTAGGA GTTTT G   
GTAC  --     T  T   A                 A G  G  G             A     - ATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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