SE3830453

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8771
  • Solanum tuberosum
  • SE3830453
  • hAT
  • Hat12
  • PGSC0003DMB000000529:167838-168119
  • AACTTAAG
  • CTTAAGCAGTGGCGGAGCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
AA      --        G     ----G         AAAGTGTGTCCATAAATAGCACAACAAAAGCTCTTTTCAAAAAGTAGAACTAGTGAGATTCGAACATACGAGCACTTCCTCGTTCCAAGGAGGTGAAACCACTGGGC
  CTTAAG  CAGTGGCG AGCCA     GAATTTCAC                                                                                                           
  ||||||  |||||||| |||||     |||||||||                                                                                                            
  GAATTC  GTCACCGC TCGGT     TCCCATAGG                                                                                                           
        AA        A     GTCAG         TTAACCTGTGGGAAGCAGCCTTTTTTTATGTCATATAAGTTCATTTTACTATGTGCTTTACTAATTTATTATATAAAACCTGTGGGAATTGTATTGTTCAACAATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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