SE3820458

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8776
  • Solanum tuberosum
  • SE3820458
  • Mutator
  • M11
  • chr01:27777651-27777976
  • TAATTACAA
  • TAATTACAAGGGAGAAG

Secondary structure and sequence

TSD    TIR
5'



3'
          AAG       ACAC       C               G   C C  A                                   C   A            --                    -             CAC    ---TGAC     A A  TG
   TAATTAC   GGAGAAG    AAGTACC CCCTAGATTATGACC AAA C CA AGACACACCTTAACTAAACTAAGGTCCTATTACCC CCT AACTCATTTTTT  TGTAATTTTGTACACCTTTT GGTTTATGTGGCA   TCCG       TCCAC C GT  
   |||||||   |||||||    ||||||| ||||||||||||||| ||| | || ||||||||||||||||||||||||||||||||||| ||| ||||||||||||  |||||||||||||||||||| |||||||||||||   ||||       ||||| | ||   
   ATTAATG   CCTTTTC    TTCATGG GGGATCTGATACTGG TTT G GT TCTGTGTGGAATTGATTTGATTCCAGGATAATGGG GGA TTGAGTAAAAAA  ACATTAAAACATGTGGAAAA CCGAATGCACCGT   AGGT       AGGTG G CG  
AAC       ---       CATC       A               G   A A  C                                   A   C            AA                    A             ---    TTATAGA     C -  GA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End