SE3850459

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8777
  • Solanum tuberosum
  • SE3850459
  • PIF/harbinger
  • To12
  • PGSC0003DMB000000353:81090-81311
  • TAA
  • AGTGCCCGTTTGGATTTACTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  T   C        TT      TTTT    -        -  TTTAAGCATTTTTTTAGTTTTGGAGGTGTCTGGAAAGGTTAAAAATTGTTTTTAAGCATTTACTTTT
  AG GCC GTTTGGAT  ACTTAT    AGGT GCTTTTGA CT                                                                   
  || ||| ||||||||  ||||||    |||| |||||||| ||                                                                   A
  TC TGG CAAACCTA  TGAATA    TTCA TGAATATT AA                                                                   
AA  C   A        TC      -TTT    T        C  TTTACAATTTTCAGTATTCATCTACTATGGGAGGAAAACCGAAAACTGAGCAATTAAAAAAAATCGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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