SE3820476

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8794
  • Solanum tuberosum
  • SE3820476
  • Mutator
  • M19
  • chr02:38976721-38977154
  • TTAAAAGAA
  • AAGGGAAAAAGCTCAAATATGCCATTTAATTTTGAGAAAAGGCTCATCT

Secondary structure and sequence

TSD    TIR
5'



3'
TTAAAAG           -           C   T  T                   ATTCCATCCATT                         CC            T              G            AAAAATA   -  GA   -  C  ---   C   CT  --- C  GTGGTCAATTATGATTCGGCCACGTCAATAATTAAATTATTTTTAAAAA
       AAGGGAAAAAG CTCAAATATGC ATT AA TTTGAGAAAAGGCTCATCT            AAAAGTTTGGCTCATCTATGTCATT  CGTTTGAGAAAA GCTCATCTATGCCA TATTTGTAAACT       TTT TC  TTT TG AA   AAT ATT  TT   A AC                                                 
       ||||||||||| ||||||||||| ||| || |||||||||||||||||||            |||||||||||||||||||||||||  |||||||||||| |||||||||||||| ||||||||||||       ||| ||  ||| || ||   ||| |||  ||   | ||                                                  
       TTCCCTTTTTC GAGTTTATACG TAG TT AAACTCTTTTCCGAGTAGA            TTTTCAAACTGAGTAGATACGGTAA  GCAAACTCTTTT CGGGTAGATACGGT ATAAACATTTGA       CCG AT  TAT CG GT   AAA ATT  GT   C CG                                                 
AAGAAAA           C           T   C  C                   ---------CAT                         AA            C              A            --CTTTA   T  -C   T  -  TTG   -   --  CTA -  TATCTACTCGGAAAATAGTTTTAAACTACTGTATAAATTCGGAAAAAGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End