SE3820478

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8796
  • Solanum tuberosum
  • SE3820478
  • Mutator
  • M2
  • chr07:3778040-3778428
  • TTTAATTTA
  • AGGGCAAATTACATAAATCACATACTTTTAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAATTT    C        T     A    C     A GCAAAA   CA   --         A      -    -TTACA           ----AA    -- ACAATAA   AAGCGCTGATACATTAATCTGTTGCGCGAGATACATTAATCGTTAAGTAAGATGCATTACATTTTATACATGATACACTAATCTGAT
        AGGG AAATTACA AAATC CATA TTTTA G      TTA  ATC  TATCCCTTA AAGTTT ATAA      GAAATCCCTCA      CGGA  T       TAT                                                                                       
        |||| |||||||| ||||| |||| ||||| |      |||  |||  ||||||||| |||||| ||||      |||||||||||      ||||  |       |||                                                                                       G
        TCCT TTTAATGT TTTAG GTGT AAAAT C      AAT  TAG  ATAGGGGAT TTCAAA TATT      TTTTAGGGAGT      ACGT  T       CTA                                                                                       
ATTTAATT    T        C     G    -     - -AAATG   AA   TA         A      A    TAAAGG           AAAAAC    AG -------   ATCACATAGAGCGCGTAGTCTAATTACATAGTCGCGAATATAGTAACATAGAACGCGTAGTCTAATCACATAATACATATTTTATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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