SE3830479

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8797
  • Solanum tuberosum
  • SE3830479
  • hAT
  • Hat2
  • chr03:47344878-47345300
  • CCTCTTAC
  • CAGAGGCGTATCCAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CCTCTTAC                ATT      -- G    -   CATTATTACAAAAAGGTTGATCTAAAATATAAATTTGATCGGTTGGACATTTAGGTTTTTAGTATTGAAAATCGTTAAAATTAATATTATAGGTCCAAAACTAATTAAAATGTCAAAAGTGTTACCAATAACCATTTAGAGAGGTGTTATCTAATTTTACAAAGAAAAAT
        CAGAGGCGTATCCAGG   TCGGGA  T ATGG GTG                                                                                                                                                                          
        ||||||||||||||||   ||||||  | |||| |||                                                                                                                                                                           
        GTCTCCGCATAGGTTC   CTTCCC  T GGCC AAG                                                                                                                                                                          
CATTCTCC                ---      AG -    C   TGCACTTAGGTACGAGGGGAGAGCTCTAGTATATATCATCACAATATAAAAACTTTTTATAACTTTATATCTACACACTTGGGTATAAGCCTCATAGTATATTACGCTACTACTGACCCACGTGGAGAGATGCACTCCAATCTTTAAACTTAATTATAAGTAGAACAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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