Plant MITE

SE3850480

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8798
Solanum tuberosum
SE3850480
PIF/harbinger
To7
PGSC0003DMB000000529:269063-269280
TAA
AGGGGTCGTTTGGTGTG

Secondary structure and sequence

TSD TIR

5'

3'

TA              G  AGGGATAAAAA       T    G  TAAAATTTTTGTATCTTGTTTGGTTGCCGTGTTTGGGATAACTTATCCCACCATTTATATCATAGTGATGG
  AGGGGTCGTTTGGT TG           TAAATAG GATG GA                                                                       
  |||||||||||||| ||           ||||||| |||| ||                                                                        
  TCCCCAGCAAACCA AC           CCTTGTT CAAT AG                                                                       
AA              -  -----------       -    -  GGTCCTAATCATTAGAACCCCAATCTATAGGACCCTATTGAATAGGGTGGTACATATACCCTATTGAATAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3850480

TAAGGGGTCGTTTGGTGTGAGGGATAAAAATAAATAGTGATGGGATAAAATTTTTGTATCTTGTTTGGTTGCCGTGTTTGGGATAACTTATCCCACCATTTATATCATAGTGATGGGATAAGTTATCCCATATACATGGTGGGATAAGTTATCCCAGGATATCTAACCCCAAGATTACTAATCCTGGGATAACTTGTTCCCAACCAAACGACCCCTAA

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