SE3830481

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8799
  • Solanum tuberosum
  • SE3830481
  • hAT
  • Hat26
  • chr06:33658632-33659397
  • CATGGAGG
  • GTAGAGCCGTCAAAATGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CATGGAG       C       T   CTTA    ATAGGGGCGTCCCAACCCTACCCGTTATTGGGATAAGGTTGGGATATGATTTTTCAAGCCCATTTAAAAATTAGGGCTTATAAGCCCGGCCCATATAAGCCCTTGGCCCTTGAGGCTTGATTGGGGCTGGGCCGAGGTCAGCCCATGGGCCAAAACTTTTTATTCAAGAGTAATTTACAATAATCTCACTAGTATATAATCTAATAATTTGAATACACGCTATGTTGTAATATTATGAATCTTCGTACCCAAATACATGTATCTCAGAATATATGGGCTCAAAATTAGGTTAATTTGTTCTAGATACACTCTATCAAAGTAGATTCACATGTATCTACGATACATATAC
       GTAGAGC GTCAAAA GGG    GCCC                                                                                                                                                                                                                                                                                                                                                             
       ||||||| ||||||| |||    ||||                                                                                                                                                                                                                                                                                                                                                              
       CATCTCG CAGTTTT CCC    AGGT                                                                                                                                                                                                                                                                                                                                                             
GGAGATA       A       T   AACC    CGGGGTGGGCCGGGTTCGGAGCACCCGGTTCCTTAAACTTCCCGATCCCTCCCGACCTTTCCCAACCCCTCCCGGCGGGAAAGTAAACCATCCCGGACTTTTACGAGTTGAGTTAGGTTGGGATCTTCCCGGCTCCCGACCCCGCCCGATCGGAAAAAAAAAAGTTTGAACATTAAAATATTGTAGTTCTTTTACTCTTCTAAAGGTTTAGTTTATACTGTTTATTACCACAACAAAGTTATTGTGATCGTTTTTAAATCACATTAATTGTACATAGAGCGTATGGTCTATACGCTCACTCTATTCTTTCACTGTTCGTTATACCCTCCCTCCGCTCCCACGCTCTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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