Plant MITE

SE3810486

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8804
Solanum tuberosum
SE3810486
Tc1/Mariner
St8
chr04:61334586-61334849
TA
TACTCCCTCCGTCCACAATTGTTTGGCAGG

Secondary structure and sequence

TSD TIR

5'

3'

                         G            A  -  GAT     A ATTAATTGTCAATTTAAACAATCAAGAAATAATTAATCACTTTTTTCCAATTCTGCCCTTAATGATAGTGTAGTTCAATTG
TACTCCCTCCGTCCACAATTGTTTG CAGGTATACTAA AA TA   GTCCA G                                                                                 
||||||||||||||||||||||||| |||||||||||| || ||   ||||| |                                                                                  
ATGAGGGAGGCAGGTGTTAACAAAC GTCCCATTCCAG TA GT   GTGGG G                                                                                 
                         A            -  C  ---     - AGTTCCTTTTAAATTATGTTCCACATTAAACTGATTATATTGGGATGATATGGTTCTTATGGTTTTCAGGTGTATTGAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810486

TACTCCCTCCGTCCACAATTGTTTGGCAGGTATACTAAAAATAGATGTCCAAGATTAATTGTCAATTTAAACAATCAAGAAATAATTAATCACTTTTTTCCAATTCTGCCCTTAATGATAGTGTAGTTCAATTGAAAAGTTATGTGGACTTTTGGTATTCTTGGTATAGTAGGGTTATATTAGTCAAATTACACCTTGTATTAAATTTTCCTTGAGGGGTGTGCATGACCTTACCCTGACAAACAATTGTGGACGGAGGGAGTA

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