SE3830491

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8809
  • Solanum tuberosum
  • SE3830491
  • hAT
  • Hat18
  • chr10:5162240-5162825
  • ATCACATT
  • TTAGGGATGGCAATGGGGCGTTGTAGGGCG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATCACAT                    TT  A     ----------  GGCGGTGCGGGTTGTGCTTAACCTGCAAATTTTTTTAATCCACCCCGCCCCGCCCCCCATAACAACTCTTTTCATTTTCAACCCGCCCCACCCCGCTGCGCATAATTTTTTTAATATTTTCTTTTTCTAGTTATGTTTGATACTAAAAATAAATTCATAAAATAATTCATTTTTCATTAAGTTATATTAATTTAATAGGATAGTGACTTAAAATTTTATTTTTTAGAGGTCAATTGGGAAACATGTAAGAAA
       TTAGGGATGGCAATGGGGCG  GT GGGCG          GG                                                                                                                                                                                                                                                            
       ||||||||||||||||||||  || |||||          ||                                                                                                                                                                                                                                                            T
       AATCCCTACCGTTACCCCGC  CG CCCGC          TG                                                                                                                                                                                                                                                            
      T                    CC  -     CCCACCCAAA  CCGATACACCCCGCCTCGCCCAAATTCCAACACACCCGCCCAGCCTACGCCCCACCTAACTTCACCTAAAAAATTTTTAATTACACTCCACCCCGCCCAACGCCCTTATACACTAAAATACATCCAAGTTTGAATTAAAATTGAAAAATGTACATTATTCTCACTATCTCGTAATAAATAATTCTATTAAAGTAATTTCGATGATTTTATAAGTTGTATTATTTACTTTTACCAAGTTATTTTTTATTATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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