Plant MITE

SE3810493

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8811
Solanum tuberosum
SE3810493
Tc1/Mariner
St20
chr08:26356321-26356587
TA
TACTCACTCCGTTCACTTTTACTTGTCACTTTTT

Secondary structure and sequence

TSD TIR

5'

3'

     A  C                    T    CCT     -  ATTTTTATTTTTACCTGTCACTTTTGACATATCAAGAAAAGACAATAATATTTTTCCATGTTTACCCTCAACATTAAATACTCTTTCTTC
TACTC CT CGTTCACTTTTACTTGTCAC TTTT   AAAAT AA                                                                                          
||||| || |||||||||||||||||||| ||||   ||||| ||                                                                                          A
ATGAG GA GCAAGTGAAAATGAACAGTG AAAA   CTGAA TG                                                                                          
     G  A                    T    ---     C  TGTGAGTAATTCTTTTACTAATAACTATATCCATAAAATGGTTTGATAGGGATAATTTACTACAAATCATAATTCAGAACCTTTTATTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810493

TACTCACTCCGTTCACTTTTACTTGTCACTTTTTCCTAAAATAAATTTTTATTTTTACCTGTCACTTTTGACATATCAAGAAAAGACAATAATATTTTTCCATGTTTACCCTCAACATTAAATACTCTTTCTTCAAATTATTTTCCAAGACTTAATACTAAACATCATTTAATAGGGATAGTTTGGTAAAATACCTATATCAATAATCATTTTCTTAATGAGTGTGTCAAGTCAAAATGTGACAAGTAAAAGTGAACGAAGGGAGTA

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