SE3830494

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8812
  • Solanum tuberosum
  • SE3830494
  • hAT
  • Hat41
  • chr04:43506528-43506953
  • TATATACC
  • TATATACCCAGGGGCGGACCCACGTGGTATCCAGGGGGTTCACAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
         CC  G          C T   -A  ---           C      TTACAC      T   AG      TTTCT  ATTT  G    T  AT          -CCC     ATAACAAAGAGAAATTGATGGCTCAGTGGCATTTACCTCTGAAATTAAGCTGTATGTCACCGGTTCGAATCCCAGTGAAAGCATTTTATTTTTTTCTTATTCAG
  TATATAC  AG GGCGGACCCA G GGT  TC   CAGGGGGTTCA AAAAAA      GGTATA ATA  GTAAAT     GT    CT TAGA AT  AAATTTTGAA    CTTCA                                                                                                        
  |||||||  || |||||||||| | |||  ||   ||||||||||| ||||||      |||||| |||  ||||||     ||    || |||| ||  ||||||||||    |||||                                                                                                        T
  ATATATG  TC CCGCCTGGGT C CTA  AG   GTTCCCCAAGT TTTTTT      TCATAT TGT  CATTTA     CG    GA ATCT TA  TTTGGAACTT    AAACC                                                                                                        
CC       --  A          - -   AA  CAA           T      ------      T   -A      ---TT  ----  A    T  CC          AAGA     CAAATTTTGGTTTGAAAATCGTGTAAAAAATTTCATTTTTTTCTTTGATTTTTTATGAAGTTTTTGTCTTGACTTTTAATTTTTTTTTTTGATTTTTGTGACTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End