SE3810496

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8814
  • Solanum tuberosum
  • SE3810496
  • Tc1/Mariner
  • St1
  • PGSC0003DMB000001122:16084-16362
  • TA
  • TACTCCCTTCGTCCCTATTTACTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
                A        C     ATTTTATAATTTGATTTTTATTTTTACTTGTCATTTTTGACAAATCGAGAAATGACAATTTTTTTCTTCTTATTATACCCTCAGTTTATTAACGTTGAGTTAATGTCTT
TACTCCCTTCGTCCCT TTTACTTG CAAAT                                                                                                             
|||||||||||||||| |||||||| |||||                                                                                                             T
ATGAGGGAGGCAGGGA AAATGAAC AGCTT                                                                                                             
                -        -     ACAACTGAATCGTGTGAATAATTCTTTTGTTACTAACCATATCACACAAATGGTAAAATGGGGTATAATTAACTAATTCAGAATTTGTATAAATGATTGATGTAAAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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