SE3810498

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8816
  • Solanum tuberosum
  • SE3810498
  • Tc1/Mariner
  • St10
  • chr10:49334301-49334558
  • TA
  • TACTCCCTCCGTCCCATTTTATATGACATCCTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                         A  T      TTATAAATAGCTGGACCACAA     AT    TTATAAAATTTA     ----    TACCAT         ATTA        ---ATAGAATAG    -          CATT
TACTCCCTCCGTCCCATTTTATATG CA CCTTTT                     TACTT  CATT            TGCAT    AAAT      ATTTTGCCT    TACCCTTG            TTAA TTAATTTTGT    
||||||||||||||||||||||||| || ||||||                     |||||  ||||            |||||    ||||      |||||||||    ||||||||            |||| ||||||||||    T
ATGAGGGAGGCAGGGTAAAATATAC GT GGAAAA                     ATGAA  GTGA            ACGTA    TTTA      TGAAATGGG    ATGGGAAT            AATT AGTTGAAATA    
                         A  -      ---------------------     AC    ------------     ATTC    CTACAT         -AAG        AAATTACAAAAG    C          ATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3