Plant MITE

SE3830499

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8817
Solanum tuberosum
SE3830499
hAT
Hat3
chr08:18520037-18520241
GTGGTAGC
GT

Secondary structure and sequence

TSD TIR

5'

3'

  GGTA     T           AA    TTAATAA         AAA    AAGAACTAGACACACGAACTAATCGAAGGGGGTTCAACATATACTATATATAC
GT    GCCAG GGCGGAGCTAG  TTTT       GGGGGTTTA   TCTG                                                     
||    ||||| |||||||||||  ||||       |||||||||   ||||                                                      
CG    TGGTC CCGCCTCGGTC  GAGA       TCCCCAAGT   GATT                                                     
  ATGG     C           GG    ----CAA         -AG    GGGGGAAGCCGCCTTTGATAATGATAAATATATACCAATTTTAATAAAAAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830499

GTGGTAGCCAGTGGCGGAGCTAGAATTTTTTAATAAGGGGGTTTAAAATCTGAAGAACTAGACACACGAACTAATCGAAGGGGGTTCAACATATACTATATATACATAAAAAATAATTTTAACCATATATAAATAGTAATAGTTTCCGCCGAAGGGGGTTAGGATGAACCCCTAACAGAGGGCTGGCTCCGCCCCTGGTGGTAGC

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