Plant MITE

SE3820502

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8820
Solanum tuberosum
SE3820502
Mutator
M2
chr02:66062147-66062536
AAAAAATAA
GGGCAAATTACAGAAATCACATACTTTTA

Secondary structure and sequence

TSD TIR

5'

3'

AAAAAATAA   C              A   A      -AGGTAAA     AATC         A      -    -TTACA           AACGAATACAATAATATAA     -G   CATTA TCTGATGCGCGAGATACGTTAATCGTTAAGTAAGATGCATTACATTTTATACATGATACACTAATTTGATGTACATTTTA
         GGG AAATTACAGAAATC CAT CTTTTA        ATTAC    TATCCCTTA AAGTTT ATAA      GAAATCCCTCA                   GCGCT  ATA     A                                                                                
         ||| |||||||||||||| ||| ||||||        |||||    ||||||||| |||||| ||||      |||||||||||                   |||||  |||     |                                                                                 
         CCT TTTAATGTCTTTAG GTG GAAAAT        TAATG    ATAGGGGAT TTCAAA TGTT      TTTTAGGGAGT                   CGCGT  TCT     A                                                                                
AATAAAAAA   T              -   -      CAAATGAA     -GTA         A      A    TAGAGG           --------------AAAAG     AG   ----- ATCACATAGGGCGCGTAGTCTAATTACATAGTCGCGCGAATATAATAACATAGAGCGCGTAGTCTAATCACATAGTACAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820502

AAAAAATAAGGGCAAATTACAGAAATCACATACTTTTAAGGTAAAATTACAATCTATCCCTTAAAAGTTTATAATTACAGAAATCCCTCAAACGAATACAATAATATAAGCGCTGATACATTAATCTGATGCGCGAGATACGTTAATCGTTAAGTAAGATGCATTACATTTTATACATGATACACTAATTTGATGTACATTTTATACATGATACACTAATCTGATGCGCGAGATACAATAATATAAGCGCGCTGATACATTAATCTGATGCGCGGGATACACTAATCTGATGCGCGAAAATGAGGGATTTTGGAGATTTGTAAAACTTATAGGGGATAATGGTAATAAGTAAACTAAAAGGTGGATTTCTGTAATTTTTCCAAAAAATAA

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