SE3820503

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8821
  • Solanum tuberosum
  • SE3820503
  • Mutator
  • M11
  • chr06:1362087-1362413
  • GATTTTCAA
  • GGGAAAATGTACAAGTACCCCCCTAGACTATGACCGAAATTCCAGAGACACATCTTAACTAAACTAAGGTCCTATTACCCCTCTAAACCCATTTCTTTTGTAATTTTGTGCACCTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
GATTTTCAAG    A  T            C            C                          A                    T  A   CCA   C                       TTGG            C AAATA   ----   A     CTC
          GGGA AA GTACAAGTACCC CCTAGACTATGA CGAAATTCCAGAGACACATCTTAACT AACTAAGGTCCTATTACCCC CT AAC   TTT TTTTGTAATTTTGTGCACCTTTT    CTTACGTGGCAT C     TCC    CTC CGCGC   
          |||| || |||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || |||   ||| |||||||||||||||||||||||    |||||||||||| |     |||    ||| |||||   A
          CCCT TT TATGTTCATGGG GGATCTGATACT GCTTTAGGGTCTCTGTGTGGAATTGA TTGATTCCAGGATAATGGGG GA TTG   AAA AAAACATTAAAACATGTGGAAAA    GAATGCACCGTG G     AGG    GAG GTGCG   
GAACTTTTAG    A  C            A            T                          C                    -  C   -AA   A                       --CA            T -----   CACC   -     TTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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