SE3820508

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8826
  • Solanum tuberosum
  • SE3820508
  • Mutator
  • M11
  • chr02:67284342-67284663
  • TAAATTCAA
  • GGGGAAATGGACAAGTACCCCCCTAGACTATGACCGAAATCCCAGAGACACACCTTAACTAAACTAAGGTCCTATTACCCCCTGAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAATTCAA     AAT  -            C                                 A      C                  T    CCATC              G          T G           ---   AAA  T    T     CCT
         GGGGA   GG ACAAGTACCCCC TAGACTATGACCGAAATCCCAGAGACACACCTT ACTAAA TAAGGTCCTATTACCCCC GAAC     TTTTTTGTAATTTT TGCACCTTTT G CTTACGTGGCA   TCC   TA CTCT ACGCG   
         |||||   || |||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||     |||||||||||||| |||||||||| | |||||||||||   |||   || |||| |||||   C
         TCCCT   CC TGTTCATGGGGG ATCTGATACTGGCTTTAGGGTCTCTGTGTGGAA TGATTT ATTCCAGGATAATGGGGG CTTG     AAAAAACATTAAAA ATGTGGAAAA C GAATGCACCGT   AGG   AT GAGG TGCGT   
 AACTTAAA     ATT  G            -                                 A      A                  -    AACAA              A          - A           GTG   --C  T    -     TAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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