SE3820509

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8827
  • Solanum tuberosum
  • SE3820509
  • Mutator
  • M8
  • chr08:6316263-6316587
  • TAAAATAAT
  • CATAATACATAAACTTGACTCTTAACTTGGCGTCAACCGACAACTATGACCTTTAACTTTGGGTGTGCACAAGTAGGCACTTAAACTAGTATAAAATTGAACAAATAGACACATTCATCCTACATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAATAATGA              T                G     C          A                       G              A       A        A         TCA         ACACCCT      AAATTTTATGTCC
           CATAATACATAAAC TGACTCTTAACTTGGC TCAAC GACAACTATG CCTTTAACTTTGGGTGTGCACAA TAGGCACTTAAACT GTATAAA TTGAACAA TAGACACAT   TCCTACATG       ACATGA             
           |||||||||||||| |||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| |||||||| |||||||||   |||||||||       ||||||             T
           GTATTATGTATTTG ACTGGGAATTGAACCG AGTTG CTGTTGATAC GGAGGTTGAAACTCATACGTGTT ATCCGTGAATTTGA CATATTT AATTTGTT ATCTGTGTG   AGGATGTAC       ATGTAC             
TAATAAAATCC              T                A     C          G                       G              A       -        C         CAC         -CATATT      ATCCTGCGGTGCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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