Plant MITE

SE3820517

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8835
Solanum tuberosum
SE3820517
Mutator
M8
chr11:9902443-9902756
TAAAAGATA
TAGGCATAATACATAAACATGACTCTTAACTTGAC

Secondary structure and sequence

TSD TIR

5'

3'

TAAAAGA                                 A GTCAGTT          A                                              A        A         TC   CTACATGACAATTTTGTGTCCTACATGG
       TAGGCATAATACATAAACATGACTCTTAACTTG C       GACAACTATG CCTTTAACTTTGGGTGTGTACAAGTAGACACTTAAATTTGTATAAA TTGAACAA TAGACACAT  GTC                            
       ||||||||||||||||||||||||||||||||| |       |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||  |||                             
       ATCCGTATTATGTATTTGTACTGGGAATTGAAC G       CTGTTGATAC GGAGGTTGAAACTCACACGTGTTCATCTGTGAATTTGAATATATTT AACTTGTT ATCTGTGTG  TAC                            
ATAGAAA                                 C AAATTGC          G                                              A        C         --   AGCATGTACCGCATTATGTGCATCCTGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820517

TAAAAGATAGGCATAATACATAAACATGACTCTTAACTTGACGTCAGTTGACAACTATGACCTTTAACTTTGGGTGTGTACAAGTAGACACTTAAATTTGTATAAAATTGAACAAATAGACACATTCGTCCTACATGACAATTTTGTGTCCTACATGGCGTCCTACGTGTATTACGCCATGTACGACATGTGTGTCTACTTGTTCAAATTTATATAAGTTTAAGTGTCTACTTGTGCACACTCAAAGTTGGAGGGCATAGTTGTCCGTTAAAGCCAAGTTAAGGGTCATGTTTATGTATTATGCCTAAAAGATA

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