SE3820519

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8837
  • Solanum tuberosum
  • SE3820519
  • Mutator
  • M8
  • chr06:10161858-10162183
  • TAAATTTTA
  • TAAATTTTAGGCATAATACATAAACATGACCATTAACTTGCTTCAGCGGACAACTATGTCCTCCAACTTTGAGTATGCACAAGTAGGCACTTAAACTTGTATAAAATTGAATAAGTAGACACATGT

Secondary structure and sequence

TSD    TIR
5'



3'
     T                          A        - T     -  A        T   CC       A  A                                                 G -   -       ACTTAATACATGTAGGACGCCACGT
 TAAA TTTAGGCATAATACATAAACATGACC TTAACTTG C TCAGC GG CAACTATG CCT  AACTTTG GT TGCACAAGTAGGCACTTAAACTTGTATAAAATTGAATAAGTAGACACAT T GTC CTACATG                         
 |||| |||||||||||||||||||||||||| |||||||| | ||||| || |||||||| |||  ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||                          
 ATTT AAATCCGTATTATGTATTTGTACTGG AATTGAAC G AGTCG CC GTTGATAC GGA  TTGAAAC TA ACGTGTTCATCTGTGAATTTGAACATATTTTAACTTGTTTATCTGTGTA G TGG TGTACCG                         
A    T                          A        C C     G  -        T   AA       C  C                                                 G T   A       TGGAATGTACCTCTAAAACACAGGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End