SE3810520

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8838
  • Solanum tuberosum
  • SE3810520
  • Tc1/Mariner
  • St13
  • chr05:15997738-15997990
  • TA
  • TACTCCCTCTGTTTCAAAAAGAATGACCTAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
              C          A C      CCTTTTTAGTT    -    -------------------     - TTACCCCTTTCCTTTTTTGGAAACACTTTAACTTCAACTTTCCACGTGGCATGTTTAAGGCC
TACTCCCTCTGTTT AAAAAGAATG C TAGTTT           TGTT CCAA                   AAAGA A                                                              
|||||||||||||| |||||||||| | ||||||           |||| ||||                   ||||| |                                                               
ATGAGGGAGGCAAA TTTTTCTTAC G ATCAAA           TGAA GTTG                   TTCTG A                                                              
              T          C A      ----------C    C    TCTCAAATTCTTTTCTTTC     A AAATTAGTACACCAAGACTTAATTTCAATACAGTTTACATGGTTTTACGGGAAATTATTACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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