SE3810523

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8841
  • Solanum tuberosum
  • SE3810523
  • Tc1/Mariner
  • St13
  • chr08:34732003-34732274
  • TA
  • TACTCCCTCCGTTTCACAAAGAATGACCTGGTTTGACTTGGCACGGAGTTTAAGTAAATAAAGAAGACTTTTGAATCTTGTGGTCCTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                                                                         -ATTTTTTT     CATTTTACTTTTTGCTTTCCACGTGGCATGTTT
TACTCCCTCCGTTTCACAAAGAATGACCTGGTTTGACTTGGCACGGAGTTTAAGTAAATAAAGAAGACTTTTGAATCTTGTGGTCCTAA         GGTAA                                 
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||                                 A
ATGAGGGAGGCAAAGTGTTTCTTACTGGACCAAACTGAACCGTGCCTCAAATTCATTTATTTCTTCTGAAAACTTAGAACACCAGGATT         TACAG                                 
                                                                                         CAATTTCAA     TTTACATGTTTTAACGGGAATTAGAACACCAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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