SE3850530

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8848
  • Solanum tuberosum
  • SE3850530
  • PIF/harbinger
  • To15
  • PGSC0003DMB000001148:10831-11538
  • TAA
  • AGGGGTTGTTTGGTAGCTGGATA

Secondary structure and sequence

TSD    TIR
5'



3'
TA                       AACAAG      -    GC   ---   GT    ----   ACTTATACGACGTTTGGTAGGTGGATAAGAAAAAGTTATTCATGTATATAATTAATATGATGTTTGGTAGGTGGATAAGAAAAAAATTACTCATGTATATAATTAATACGGCGTTTGGTAGGTGGATAAGAAAAAAGTTGTTCATGTATAAAATTTATACAACGTTTGGTTGACAATTTTGAAATTTGCATAACTATATATGTACAAGTTATGAGTAAATTTGTGTATTATTTATGCGGAGTAGAAGGTGAAATAATTAATACGGGTATAGCTAATACATGGATAAAAAGTTAAAG
  AGGGGTTGTTTGGTAGCTGGATA      TTTTAT CCAT  ATT   AGA  TTGT    ATA                                                                                                                                                                                                                                                                                                        
  |||||||||||||||||||||||      |||||| ||||  |||   |||  ||||    |||                                                                                                                                                                                                                                                                                                        A
  TCCCCAGCAAATCATCGACCTAT      TCAATA GTAC  ATA   ATT  ATAC    AAT                                                                                                                                                                                                                                                                                                        
AA                       -----C      T    --   AGC   --    CCAT   CAATACAGCAATAATCATTACACACATAATCAATACGTCCATAATCATTACACTCATAATCAATACATCCATAATTAATATGTTCATGATCGAGACGTTCTAAATCAATACGTATTTAATAAGGAAACCTACAACCAAAAAATATAATTTTTAATCATTTTAATTTATAAAAAATTTAATATTGTAAAAAAATGTTAATATAGGAAAGGAAGAAATTGAAACATAAATTTAATTTTGTAAAGAAACTAATACATTTTCTTCTTTCATCAGTTCACTTTTACTATTCCCATTATAAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End