Plant MITE

SE3810532

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8850
Solanum tuberosum
SE3810532
Tc1/Mariner
St1
chr10:26540085-26540348
TA
TCCCTCTGTCCTTAATTACTTGTCC

Secondary structure and sequence

TSD TIR

5'

3'

TAC                  C      ----------------      GAAT  ACA  CC  TTAGGAAAATAATGATTGACATAGTGAGTTTACCATTTTACCCATATAATTATAAAGTAGATGAATTAAAAAGTTAAGA
   TCCCTCTGTCCTTAATTA TTGTCC                ACTTAT    TG   CA  TA                                                                               
   |||||||||||||||||| ||||||                ||||||    ||   ||  ||                                                                                
   AGGGAGACAGGGATTAAT AACAGG                AACAGG    AA   AA  CT                                                                               
ATA                  T      TTAAAAAGAGAAAATG      ---T  ---  --  ATTTAGTTTTCCTGTTAATATAAAAAAAGTACAATATGGGAATTAATTAATAAAACTTTTTCCATCTTAAATAACTTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810532

TACTCCCTCTGTCCTTAATTACTTGTCCACTTATGAATTGACACACCTATTAGGAAAATAATGATTGACATAGTGAGTTTACCATTTTACCCATATAATTATAAAGTAGATGAATTAAAAAGTTAAGAGTTTCAATAAATTCTACCTTTTTCAAAATAATTAATTAAGGGTATAACATGAAAAAAATATAATTGTCCTTTTGATTTATCAAAATGGACAAGTAAAAGAGAAAAATTGGACAATTAATTAGGGACAGAGGGAATA

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