SE3830534

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8852
  • Solanum tuberosum
  • SE3830534
  • hAT
  • Hat22
  • chr12:22016097-22016603
  • GTGTGCGA
  • TGTGCGACAATGTTTTAAAAGGCAG

Secondary structure and sequence

TSD    TIR
5'



3'
G     GA  A      A     C  GGATG  A      ACATTTTATATAGTA     -     -- GTAA     GAGACACGAGGCGTAAGTCTTATGGATCTACGGGGCGTAGTCTCATGTATATTCAATTTTATAATTTTATCACTAAGTACATAAGCAAAAGTAAAACTTTCAATTATTTTACATATAAATTTTAATAAACAACCTATAATATATAGAAAAAAAATATTATGATTTTTATTTGAGAAAGATATTAA
 TGTGC  CA TGTTTT AAAGG AG     TG GGCGAG               CGGGG TGAGA  C    GTCCC                                                                                                                                                                                         
 |||||  || |||||| ||||| ||     || ||||||               ||||| |||||  |    |||||                                                                                                                                                                                         T
 GCGTG  GT ACAAAA TTTTT TC     AC CCGCTC               GCCCC CATGT  T    TTGCG                                                                                                                                                                                         
A     TG  C      G     A  -AAAA  C      ------------AGA     C     TT ----     AAGCCCCGTGTTTAACTTCTACATCTTGGTATCCAGCAATCAGGATCTTAAATCCCGCCTTGGGACCAGCCTTTTTGCATGCGTACACGCAAAAAAAATAAAACGAAATTTAGTATAAAAAATAATAACCACATTACTATAAAGAGTTTATCATCAACATTATGAAAAAAAGAAGTAATAACCAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End