SE3820537

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8855
  • Solanum tuberosum
  • SE3820537
  • Mutator
  • M30
  • chr05:4861458-4862131
  • TAAATTAAT
  • ATTAATGGCATAATACATATATTGGACCCTAAACTTGGTTTCAAATTTTAACTTTGACCTCCAACTTTCATAGTGCACAAACAGGCACTTTAACTATCCAACTTTTTAATAAATAAACACGCGATTTTTGGAGGCAAAGAGCGTGAAATGCA

Secondary structure and sequence

TSD    TIR
5'



3'
TAA      ---                                                                                               C                   C AT     -GA       A      AA    AAACGCTCCC     TA    T   -CCACTCAGT    GC    -----------TAATTA   -      CACA CCATTTTAGAACTAAAAAAAAAATTAAAATTACTTTTAATTAATATACAAGGGTTATAGCTCTTTTTCCACAATGACAAAAAAAATTAGAAGCCATTTGCACTAAATATGAGCA
   ATTAAT   GGCATAATACATATATTGGACCCTAAACTTGGTTTCAAATTTTAACTTTGACCTCCAACTTTCATAGTGCACAAACAGGCACTTTAACTATCCAA TTTTTAATAAATAAACACG G  TTTTG   GGCAAAG GCGTGA  TGCA          ACGTG  TTAG GAG          GGCT  CAAC                 AAT ACTTTA    T                                                                                                                  
   ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |  |||||   ||||||| ||||||  ||||          |||||  |||| |||          ||||  ||||                 ||| ||||||    |                                                                                                                  C
   TAATTA   CCGTATTATGTATATAACCTGGGATTTGAACCGAAGTTTAAAGTTGAAACTGGAGGTTGAAAGTATCACGTGTTTGTCCGTGAAATTGATAGGTT GAAAATTATTTATTTGTGC C  AGGAT   CCGTTTT CGCACT  ACGT          TGCGC  AATC CTC          CCGG  GTTG                 CTT ACTGTT    T                                                                                                                  
         AAT                                                                                               A                   A AC     GGA       G      AC    --ACATAAAA     TC    -   ATTAAAAACT    GT    TCATTTTTTTTTTACGA   T      ---- AGATGGGAACTAGTTAGGGAAAATATATTATAGAAATATAAAGGTTTAGTTTTAGAGTAAAGAGAAAGGAGGAGAAAGTTTAGTTTTAAAAAACGGAGAGAAAATTTTGCTAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End