Plant MITE

SE3810543

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8861
Solanum tuberosum
SE3810543
Tc1/Mariner
St5
chr11:9976171-9976420
TA
TACTCCCTCCGTTTCAATTTGTTTATCCTATTTT

Secondary structure and sequence

TSD TIR

5'

3'

         C              ATC       -------   T ---- GCAT   G     AAAAG    GAAAACTTTTGAATCTTGTGGTCTTAAATTAAAGATATATCAAATGTATCAAAATGTCCTTT
TACTCCCTC GTTTCAATTTGTTT   CTATTTT       GAC T    G    GGA TATAA     TAAA                                                              
||||||||| ||||||||||||||   |||||||       ||| |    |    ||| |||||     ||||                                                              A
ATGAGGGAG CAAAGTTAAACGAA   GATGAAA       TCA G    A    GTT TTTCA     ACGG                                                              
         A              CAA       GGAAAAA   - GCAA ----   -     ----T    AGAAAGGAAAAACCGTTGAGAAATTAAAGTTGAAAGGTTACTGTACAAATTCTGGTGTTCTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810543

TACTCCCTCCGTTTCAATTTGTTTATCCTATTTTGACTTGGCATGGAGTATAAAAAAGTAAAGAAAACTTTTGAATCTTGTGGTCTTAAATTAAAGATATATCAAATGTATCAAAATGTCCTTTAATCTTGTGGTCTTAAACATGTCATTGGAAAGTTGAAATTAAAGAGTTGCCAAAAAGGAAAGAGGCATACTTTTTGAAACGGACTAAAAAGGAAAGTAGAACAAGCAAATTGAAACAGAGGGAGTA

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