SE3850544

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8862
  • Solanum tuberosum
  • SE3850544
  • PIF/harbinger
  • To6
  • chr05:6846215-6846625
  • TAA
  • AGGAGTTGTTTGGTTTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   A          T   ATTCAAG     -  GGGATTAGTTATGAAGGGATAAGTTATAATGAGATTAGTTATGATGGATAAGTTATGCTAAGATTATTTTTTATTGAGTGTTTGGTTTGTTGTATTTAAAATAATAAATCTTAAGAACATGTAAGTTTACAAAAATACCCTTCATGGATGTGAAAAGTAATAATGTATAAAAAA
  AGG GTTGTTTGGT TGA       TTATG AT                                                                                                                                                                              
  ||| |||||||||| |||       ||||| ||                                                                                                                                                                              T
  TCC CAGCAAACCA ACT       TCCTA TG                                                                                                                                                                              
AA   C          C   -------     T  AATTTTATTAGGACCCTAATTTAATATCACGGTGAATTAAACAACAAACCAACCGTTCAGGCCCTATTGAATAGGGCTCTAATTATTAATCATGGCCCTATTCAATAGGGAAGGGTACCCACCATAACATTAGGGCCCTATTTTACTGATTTACTGTTTTTATAGGGAAATTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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