SE3810546

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8864
  • Solanum tuberosum
  • SE3810546
  • Tc1/Mariner
  • St1
  • chr03:27546556-27546835
  • TA
  • TTCCCCGTTCCTATTTACTTGTCAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAC     --C    C                ATTTCCTAA      ----      GTTTGTTTGTCATTTTTGACAACAAAAAGGAAGGACAATATTTTTTTTTCCTATTATACCCTCAATTTATTAACATTGAGTTAATGTCTTT
   TTCCC   GTTC TATTTACTTGTCAAAT         TTTGAT    TTCTTT                                                                                           
   |||||   |||| ||||||||||||||||         ||||||    ||||||                                                                                            
   AAGGG   CAGG ATAAATGAACGGTTTA         AAACTG    GTGTGG                                                                                           
 AT     AAA    A                ---------      AACT      ATAATTCTTTTTTTACTAACCATATCACTCAAATATTTAAAATGGGGATAATTAATTATCAGAGTTTGTATAAATAAGTGATGTAAAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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