SE3830547

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8865
  • Solanum tuberosum
  • SE3830547
  • hAT
  • Hat19
  • chr04:43665778-43665914
  • CTTAAGAT
  • CTTAAGATCTAGGTTGCTTGGACTCTCCAAAAATGTTGCCG

Secondary structure and sequence

TSD    TIR
5'



3'
        AT   G    CT        C    A      C  CACC             C     ATGC
  CTTAAG  CTA GTTG  TGGACTCT CAAA ATGTTG CG    TGTGTCGGATCCT CAAAA    
  ||||||  ||| ||||  |||||||| |||| |||||| ||    ||||||||||||| |||||    A
  GAATTC  GAT CAAC  GTCTGAGA GTTT TACAGT GC    GCACAGCCTAGGA GTTTT    
TA      --   A    AT        A    G      A  TCAC             A     CATC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End