SE3820551

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8869
  • Solanum tuberosum
  • SE3820551
  • Mutator
  • M8
  • chr01:73319612-73319936
  • AAATTAATA
  • ATTAATAGGTATAATACATAAATATGCCCTTTAACTTGGCTTCA

Secondary structure and sequence

TSD    TIR
5'



3'
AA      -A               TA                    AATC  A  G   -  A       C        C                 C         A        A      CACAT          A   CC       CATTTTTTGT  TA
  ATTAAT  GGTATAATACATAAA  TGCCCTTTAACTTGGCTTCA    AC TT ATG CC TTCAACT TGGGTGTG ACAAGTAGACACTTAAA TTGTATAAA TTGAACAA TAGACA     GTCCTACATG CAT  TACATGT          CC  
  ||||||  |||||||||||||||  ||||||||||||||||||||    || || ||| || ||||||| |||||||| ||||||||||||||||| ||||||||| |||||||| ||||||     |||||||||| |||  |||||||          ||  C
  TAATTA  CCGTATTGTGTATTT  ACGGGAAATTGAACCGAAGT    TG AA TAC GG AGGTTGA ACCTATAC TGTTCATCTGTGAATTT AACATATTT AACTTGTT ATTTGT     TAGGATGTAC GTA  ATGTGCA          GG  
 A      AA               TC                    AAAA  C  A   A  -       A        A                 A         C        C      ATACT          C   TT       ----TCCTGT  TG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End