Plant MITE

SE3830555

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8873
Solanum tuberosum
SE3830555
hAT
Hat35
chr06:2167937-2168487
ACTAGACT
CTAGACTCAGAGGCGTAT

Secondary structure and sequence

TSD TIR

5'

3'

  A    AC    A  C    CCAA     - ---- T AA     GTGCACAAATACGAAAAAATGTATCTTAAATATAAATTTGATAAATTTGACTTTTAGGTTCTTAATATTAACCATTAAATTTAAAATTATAGGTCCAAAATATATAATACTATTACTTTAAATTTTAATATACACATTTGATTTAATTATATAAAAATCTTATAGTGCAAAGTTTTTTAGGAACTTCCAATGTAAGGCACTTGAAAATTTTGAAAGATTAAAGGAAAAAAACAAAA
   CTAG  TCAG GG GTAT    GAATT C    G C  GATGG                                                                                                                                                                                                                                            
   ||||  |||| || ||||    ||||| |    | |  |||||                                                                                                                                                                                                                                             
   GATC  AGTC CC CATA    TCTCC C    G A  CCCAA                                                                                                                                                                                                                                            
TCA    --    C  A    --AA     C CACA C --     ATGCACTTGGGTACAAGAGGAGAAATCTAGTATATATTATCACAATATAAAAAAATTTTATAAATTTATATTTATACACTTGAGTGCAAATTTCATAATATATTATTATGTTATTACTAACTCACGTAGAGAGATTCATTCCTATTTTTAAATTCAGAATATAGATAGAACAGGAAAACTCATTGTGAAGGGGTTCACTAATAGCTAATATGAAAACTGCAAAGTTGATTAAAAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830555

ACTAGACTCAGAGGCGTATCCAAGAATTCGTCAAGATGGGTGCACAAATACGAAAAAATGTATCTTAAATATAAATTTGATAAATTTGACTTTTAGGTTCTTAATATTAACCATTAAATTTAAAATTATAGGTCCAAAATATATAATACTATTACTTTAAATTTTAATATACACATTTGATTTAATTATATAAAAATCTTATAGTGCAAAGTTTTTTAGGAACTTCCAATGTAAGGCACTTGAAAATTTTGAAAGATTAAAGGAAAAAAACAAAAGAAAAATTAGTTGAAACGTCAAAAGTATAATCGATAATCACTTGGGGAAGTGTTACTCAAAAGGACAAGATAGATATAAGACTTAAATTTTTATCCTTACTTAGAGAGATGCACTCAATCATTATTGTATTATTATATAATACTTTAAACGTGAGTTCACATATTTATATTTAAATATTTTAAAAAAATATAACACTATTATATATGATCTAAAGAGGAGAACATGGGTTCACGTAAACCCACGACACCCCCTCTAAATACACCCCTGACTAGACT

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