Plant MITE

SE3810556

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8874
Solanum tuberosum
SE3810556
Tc1/Mariner
St1
chr02:46780098-46780376
TA
TACTCCCTTTATCCCTGATTAATTGTCCACTTTT

Secondary structure and sequence

TSD TIR

5'

3'

     C    A          A    C       TCTTTTTT     T   TAATTAC    ---  A     - CAAATCAAGAAAGGACAAAAAAATTTACCTATTATACTCTCAATTAATTATTTTGAAAAAAGATAGAACTTCTT
TACTC CTTT TCCCTGATTA TTGT CACTTTT        AGTTG CAC       TTGT   CC TTTTG A                                                                          
||||| |||| |||||||||| |||| |||||||        ||||| |||       ||||   || ||||| |                                                                           
ATGAG GAAA AGGGATTAAT AACA GTGAAAA        TTAAC GTG       TGGA   TT CTTTT T                                                                          
     A    C          G    A       -------C     T   -------    AAA  -     G TACTAACTGTATCACTCAAATGGTAAAAAGGGGATAATTAATACTTCACCTACTTAATTTTTGAATTCTAAAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810556

TACTCCCTTTATCCCTGATTAATTGTCCACTTTTTCTTTTTTAGTTGTCACTAATTACTTGTCCATTTTGACAAATCAAGAAAGGACAAAAAAATTTACCTATTATACTCTCAATTAATTATTTTGAAAAAAGATAGAACTTCTTGAAAATCTTAAGTTTTTAATTCATCCACTTCATAATTAATAGGGGAAAAATGGTAAACTCACTATGTCAATCATTGTTTTCTTAAAAGGTGTGTCAATTCAAAAGTGAACAAGTAATTAGGGACAAAGAGAGTA

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