SE3830560

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8878
  • Solanum tuberosum
  • SE3830560
  • hAT
  • Hat19
  • chr03:46291219-46291355
  • CCAATGAT
  • CAATGATCTAAGTTGCTCGGACTCTCCAAAAATGTTGCCGCGCCCGTTTTGGATCCTCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
 C  A  AT   A              C       G   C  C CC   T         C  AAAATGC
  CA TG  CTA GTTGCTCGGACTCT CAAAAAT TTG CG G  CGT TTGGATCCT CA       
  || ||  ||| |||||||||||||| ||||||| ||| || |  ||| ||||||||| ||       A
  GT AC  GAT CAACGAGCCTGAGA GTTTTTA AGT GC C  GCA AGCCTAGGA GT       
TA  A  -C   A              A       G   A  C AC   C         A  CTTCATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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